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USES OF ARED:

mRNA turnover studies:

Lloyd T Lam, Oxana K Pickeral, Amy C Peng, Andreas Rosenwald, Elaine M Hurt, Jena M Giltnane, Lauren M Averett, Hong Zhao, R Eric Davis, Mohan Sathyamoorthy, Larry M Wahl, Eric D Harris, Judy A Mikovits, Anne P Monks, Melinda G Hollingshead, Edward A Sausville and Louis M Staudt . (2001) Genomic-scale measurement of mRNA turnover and the mechanisms of action of the anti-cancer drug flavopiridol. Genome Biology, 2, 0041.10041.11.

Mathias A. E. Frevel, Tala Bakheet, Aristobolo M. Silva, John G. Hissong, Khalid S. A. Khabar, Bryan R. G. Williams (2003). p38 MAP kinase dependent and independent signaling of mRNA stability of AU-rich element containing transcripts. Molecular and Cellular Biology. Jan;23(2):425-36.

 

Arvind Raghavan, Rachel L. Ogilvie, Cavan Reilly, Michelle L. Abelson, Shalini Raghavan, Jayprakash Vasdewani, Mitchell Krathwohl and Paul R. Bohjanen. (2002). Genome-wide analysis of mRNA decay in resting and activated primary human T lymphocytes , Nucleic Acids Research  30: 5529-5538.

 

Tebo J, Der S, Frevel M, Khabar KS, Williams BR, Hamilton TA. Heterogeneity in Control of mRNA Stability by AU Rich Elements. J Biol Chem. 2003 Jan 28 [epub ahead of print]            

 

Others:

 

Khabar, K. S., Dhalla, M., Bakheet, T., Sy, C. and al-Haj, L. (2002) An integrated computational and laboratory approach for selective amplification of mRNAs containing the adenylate uridylate-rich element consensus sequence. Genome Research, 12, 985-95.

 

Reconciliation of ARED clustering:
Wilusz, CJ., Wormington, M., and Peltz, S.W. 2001. The cap-to-tail guide to
mRNA turnover.
Nature Reviews. Molecular Cell Biology.2:237-246.